Jobs in Structural Biology and Related Fields


PhD Project: New Tools for Bacteriophage Bioinformatics


The Max Planck Institute for Multidisciplinary Sciences, Germany
Application deadline: 10 Jul 2026


Bacteriophages have a huge impact on microbial communities, including our gut microbiomes. Due to their enormous effective population sizes, their protein sequences often diverge beyond recognition despite conserving similar structures and functions. This creates major challenges for sequence-based structure and function prediction.

 

In this project, you will develop a software platform for:

  • Detecting phage genetic modules (groups of neighboring genes/proteins participating in the same pathway or function)
  • Functional annotation of phage proteins using these modules
  • Phage classification and taxonomy based on genetic modules

 

The platform will build upon our widely used tools:

  • MMseqs2
  • Foldseek
  • Spacedust

 

You will be part of an exciting French-German collaboration involving research groups in Paris, Jena, and Göttingen!

 

Who should apply?

  • Strong programming skills
  • Interest in machine learning, statistics, or computational biology
  • Quantitative mindset and enthusiasm for developing novel bioinformatics methods

 

If this sounds like you, we would be glad to hear from you!

Please send your CV to: amir.asgary@mpinat.mpg.de

For info on our research group, see here.

For info on our publications, see here.