iNEXT-Discovery: Scientific publications

 

All publications from iNEXT-Discovery acknowledge the project and are appearing as Open Access!

 

61-80   <    >  21-40

 

       

60

Jan 6, 2021

Unveiling the dimer/monomer propensities of Smad MH1-DNA complexes

doi: 10.1016/j.csbj.2020.12.044

Ruiz L, Kaczmarska Z, Gomes T, Aragon E, Torner C, Freier R, Baginski B, Martin-Malpartida P, de Martin Garrido N, Marquez JA, Cordeiro TN, Pluta R, Macias MJ.

Comput Struct Biotechnol J. 2021, 19:632-646

59

May 3, 2021

Molecular Basis of Multiple Mitochondrial Dysfunctions Syndrome 2 Caused by CYS59TYR BOLA3  Mutation

doi: 10.3390/ijms22094848

Saudino G, Suraci D, Nasta V, Ciofi-Baffoni S, Banci L.

Int. J. Mol. Sci. 2021, 22, 4848

58

Jun 3, 2021

An automated platform for structural analysis of membrane proteins through serial crystallography

doi: 10.1101/2021.06.03.446146

Healey RD, Basu S, Humm AS, Leyrat C, Cong X, Golebiowski J, Dupeux F, Pica A, Granier S, Marquez JA.

BioRxiv preprint

57

Feb 26, 2021

Fixed Target Serial Data Collection at Diamond Light Source

doi: 10.3791/62200

Horrell S, Axford D, Devenish NE, Ebrahim A, Hough MA, Sherrell DA, Storm SLS, Tews I, Worrall JAR, Owen RL.

J. Vis. Exp. 2021, 168, e62200

56

May 9, 2021

Disentangling Chromophore States in a Reversibly Switchable Green Fluorescent Protein: Mechanistic Insights from NMR Spectroscopy

doi: 10.1021/jacs.1c02442

Christou NE, Giandoreggio-Barranco K, Ayala I, Glushonkov O, Adam V, Bourgeois D, Brutscher B.

J Am Chem Soc. 2021, 143(19):7521-7530

55

August 9, 2021

Cryo-EM density maps adjustment for subtraction, consensus and sharpening

doi: 10.1016/j.jsb.2021.107780

Fernández-Giménez E, Martínez M, Sánchez-García R, Marabini R, Ramírez-Aportela E, Conesa P, Carazo JM, Sorzano COS.

J. Struct. Biol. 2021, 213:107780

54

July 26, 2021

New restraints and validation approaches for nucleic acid structures in PDB-REDO

doi: 10.1107/S2059798321007610

De Vries I, Kwakman T, Lu XJ, Hekkelman ML, Deshpande M, Valenkar S, Perrakis A, Joosten RP.

Acta Cryst. 2021 D77

53

March 3, 2021

High-Resolution Studies of Proteins in Natural Membranes by Solid-State NMR

doi: 10.3791/62197

Beriashvili D, Schellevis RD, Napoli F, Weingarth M, Baldus M

J. Vis. Exp. (169), e62197.

52

June 7, 2021

Mixed-Valence Compounds as Polarizing Agents for Overhauser Dynamic Nuclear Polarization in Solids

doi: 10.1002/anie.202103215

Gurinov A, Sieland B, Kuzhelev A, Elgabarty H, Kühne TD, Prisner T, Paradies J, Baldus M, Ivanov KL, Pylaeva S.

Angew. Chem. Int. Ed. 2021, 60, 15371-15375

51

August 9, 2021

Frag4Lead: growing crystallographic fragment hits by catalog using fragment-guided template docking

doi: 10.1107/S2059798321008196

Metz A, Wollenhaupt J, Glöckner S, Messini N, Huber S, Barthel T, Mehrabed A, Gerber H-DA. Heine, Klebe G, Weiss MS.

Acta Crystallogr D Struct Biol. 2021;77(Pt 8)

50

May 21, 2021

Overarching control of autophagy and DNA damage response by CHD6 revealed by modeling a rare human pathology

doi: 10.1038/s41467-021-23327-1

Kargapolova Y, Rehimi R, Kayserili H, Brühl J, Sofiadis K, Zirkel A, Palikyras S, Mizi A, Li Y, Yigit G, Hoischen A, Frank S, Russ N, Trautwein J, van Bon B, Gilissen C, Laugsch M, Gusmao EG, Josipovic N, Altmüller J, Nürnberg P, Längst G, Kaiser FJ, Watrin E, Brunner H, Rada-Iglesias A, Kurian L, Wollnik B, Bouazoune K, Papantonis A.

Nat Commun. 2021 May 21;12(1):3014.

49

May 20, 2021

A Modular Platform for Streamlining Automated Cryo-FIB Workflows

doi: 10.1101/2021.05.19.444745

Klumpe S, Fung HKH, Goetz SK, Zagoriy I, Hampoetz B, Zhang X, Erdmann PS, Baumbach J, Müller CW, Beck M, Plitzko JM, Mahamid J.

BioRxiv. 2021 May 20; 10.1101/2021.05.19.444745

48

July 4, 2021

Rapid protein delivery to living cells for biomolecular investigation

doi: 10.1016/j.bbrc.2021.07.006

Torricella F, Bonucci A, Polykretis P, Cencetti F, Banci L.

Biochem Biophys Res Commun. 2021 Jul 15;570:82-88.

47

July 06, 2021

SARS-CoV-2 Mpro inhibition by a zinc ion: structural features and hints for drug design

doi: 10.1039/d1cc02956h

Grifagni D, Calderone V, Giuntini S, Cantini F, Fragai M, Banci L.

Chem. Commun., 2021, 57, 7910

46

July 20, 2021

Evaluation of the Higher Order Structure of Biotherapeutics Embedded in Hydrogels for Bioprinting and Drug Release

doi: 10.1021/acs.analchem.1c01850

Rizzo D, Cerofolini L, Pérez-Ràfols A, Giuntini S, Baroni F, Ravera E, Luchinat C, Fragai M.

Anal Chem 2021, Aug 2

45

 June 23, 2021

Exploring the druggability of conserved RNA regulatory elements
in the SARS-CoV-2 genome

doi: 10.1002/anie.202103693

Sreeramulu S, Richter C, Berg H, Wirtz Martin MA, Ceylan B, Matzel T, Adam J, Altincekic N, Azzaoui K, Bains JK, Blommers MJJ, Ferner J, Fürtig B, Göbel M, Grün JT, Hengesbach M, Hohmann KF, Hymon D, Knezic B, Martins J, Mertinkus KR, Niesteruk A, Peter SA, Pyper DJ, Qureshi NS, Scheffer U, Schlundt A, Schnieders R, Stirnal E, Sudakov A, Tröster A, Vögele J, Wacker A, Weigand JE, Wirmer-Bartoschek J, Wöhnert J, Schwalbe H.

Angew. Chem. Int. Ed. 2021, 10.1002/anie.202103693

44

 November 10, 2021

Secondary structure determination of conserved SARS-CoV-2 RNA elements by NMR spectroscopy

doi: 10.1093/nar/gkaa1013

Wacker A, Weigand JE, Akabayov SR, Altincekic N, Bains JK, Banijamali E, Binas O, Castillo-Martinez J, Cetiner E, Ceylan B, Chiu LY, Davila-Calderon J, Dhamotharan K, Duchardt-Ferner E, Ferner J, Frydman L, Fürtig B, Gallego J, Grün JT, Hacker C, Haddad C, Hähnke M, Hengesbach M, Hiller F, Hohmann KF, Hymon D, de Jesus V, Jonker H, Keller H, Knezic B, Landgraf T, Löhr F, Luo L, Mertinkus KR, Muhs C, Novakovic M, Oxenfarth A, Palomino-Schätzlein M, Petzold K, Peter SA, Pyper DJ, Qureshi NS, Riad M, Richter C, Saxena K, Schamber T, Scherf T, Schlagnitweit J, Schlundt A, Schnieders R, Schwalbe H, Simba-Lahuasi A, Sreeramulu S, Stirnal E, Sudakov A, Tants JN, Tolbert BS, Vögele J, Weiß L, Wirmer-Bartoschek J, Wirtz Martin MA, Wöhnert J, Zetzsche H.

Nucleic Acids Res. 2020, Dec 16;48(22):12415-12435

43

 June 5, 2021

The Automated Crystallography Pipelines at the EMBL HTX Facility in Grenoble

doi: 10.3791/62491

Cornaciu I, Bourgeas R, Hoffmann G, Dupeux F, Humm AS, Mariaule V, Pica A, Clavel D, Seroul G, Murphy P, Márquez JA.

J Vis Exp.; 2021, Jun 5:172

42

March 19, 2021

Single Particle Cryo-Electron Microscopy: From Sample to Structure

doi: 10.3791/62415

White JB, Maskell DP, Howe A, Harrow M, Clare DK, Siebert CA, Hesketh EL, Thompson RF.

J Vis Exp.; 2021, Mar 19:169

41

May 29, 2021

Achieving Efficient Fragment Screening at XChem Facility at Diamond Light Source

doi: 10.3791/62414

Douangamath A, Powell A, Fearon D, Collins PM, Talon R, Krojer T, Skyner R, Brandao-Neto J, Dunnett L, Dias A, Aimon A, Pearce NM, Wild C, Gorrie-Stone T, von Delft F.

J Vis Exp.; 2021, May 29:171

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