iNEXT-Discovery: Scientific publications

 

 

All publications from iNEXT-Discovery acknowledge the project and appear as Open Access!

 

161-180 <  >  121-140

 

       

160

Jul 01, 2023

Scipion Flexibility Hub: an integrative framework for advanced analysis of conformational heterogeneity in cryoEM

doi: 10.1107/S2059798323004497

Herreros D, Krieger JM, Fonseca Y, Conesa P, Harastani M, Vuillemot R, Hamitouche I, Serrano Gutiérrez R, Gragera M, Melero R, Jonic S, Carazo JM, Sorzano COS.

Acta Crystallogr D Struct Biol. 2023 Jul 1

159

Jul 01, 2023

Structure-function studies of a novel laccase-like multicopper oxidase from Thermothelomyces thermophila provide insights into its biological role

doi: 10.1107/S2059798323004175

Kosinas C, Zerva A, Topakas E, Dimarogona M.

Acta Crystallogr D Struct Biol. 2023 Jul 1

158

Jun 13, 2023

Modulation of the substrate specificity of the kinase PDK1 by distinct conformations of the full-length protein

doi: 10.1126/scisignal.add3184

Sacerdoti M, Gross LZF, Riley AM, Zehnder K, Ghode A, Klinke S, Anand GS, Paris K, Winkel A, Herbrand AK, Godage HY, Cozier GE, Süß E, Schulze JO, Pastor-Flores D, Bollini M, Cappellari MV, Svergun D, Gräwert MA, Aramendia PF, Leroux AE, Potter BVL, Camacho CJ, Biondi RM.

ci Signal. 2023 Jun 13;16(789):eadd3184

157

Jun 06, 2023

Integration of NMR Spectroscopy in an Analytical Workflow to Evaluate the Effects of Oxidative Stress on Abituzumab: Beyond the Fingerprint of mAbs

doi: 10.1021/acs.analchem.3c00317

Cerofolini L, Ravera E, Fischer C, Trovato A, Sacco F, Palinsky W, Angiuoni G, Fragai M, Baroni F.

Anal Chem. 2023 Jun 6

156

May 31, 2023

PAXX binding to the NHEJ machinery explains functional redundancy with XLF

doi: 10.1126/sciadv.adg2834

Seif-El-Dahan M, Kefala-Stavridi A, Frit P, Hardwick SW, Chirgadze DY, Maia De Oliviera T, Britton S, Barboule N, Bossaert M, Pandurangan AP, Meek K, Blundell TL, Ropars V, Calsou P, Charbonnier JB, Chaplin AK.

Sci Adv. 2023 Jun 2;9(22):eadg2834

155

Jun 01, 2023

The CCP4 suite: integrative software for macromolecular crystallography

doi: 10.1107/S2059798323003595

Agirre J, Atanasova M, Bagdonas H, Ballard CB, Baslé A, Beilsten-Edmands J, Borges RJ, Brown DG, Burgos-Mármol JJ, Berrisford JM, Bond PS, Caballero I, Catapano L, Chojnowski G, Cook AG, Cowtan KD, Croll TI, Debreczeni JÉ, Devenish NE, Dodson EJ, Drevon TR, Emsley P, Evans G, Evans PR, Fando M, Foadi J, Fuentes-Montero L, Garman EF, Gerstel M, Gildea RJ, Hatti K, Hekkelman ML, Heuser P, Hoh SW, Hough MA, Jenkins HT, Jiménez E, Joosten RP, Keegan RM, Keep N, Krissinel EB, Kolenko P, Kovalevskiy O, Lamzin VS, Lawson DM, Lebedev AA, Leslie AGW, Lohkamp B, Long F, Malý M, McCoy AJ, McNicholas SJ, Medina A, Millán C, Murray JW, Murshudov GN, Nicholls RA, Noble MEM, Oeffner R, Pannu NS, Parkhurst JM, Pearce N, Pereira J, Perrakis A, Powell HR, Read RJ, Rigden DJ, Rochira W, Sammito M, Sánchez Rodríguez F, Sheldrick GM, Shelley KL, Simkovic F, Simpkin AJ, Skubak P, Sobolev E, Steiner RA, Stevenson K, Tews I, Thomas JMH, Thorn A, Valls JT, Uski V, Usón I, Vagin A, Velankar S, Vollmar M, Walden H, Waterman D, Wilson KS, Winn MD, Winter G, Wojdyr M, Yamashita K.

Acta Crystallogr D Struct Biol. 2023 Jun 1;79(Pt 6):449-461

154

Jun 01, 2023

Analysis and validation of overall N-glycan conformation in Privateer

doi: 10.1107/S2059798323003510

Dialpuri JS, Bagdonas H, Atanasova M, Schofield LC, Hekkelman ML, Joosten RP, Agirre J.

Acta Crystallogr D Struct Biol. 2023 Jun 1

153

May 19, 2023

Structural plasticity of NFU1 upon interaction with binding partners: insights into the mitochondrial [4Fe-4S] cluster pathway

doi: 10.1016/j.jmb.2023.168154

Da Vela S, Saudino G, Lucarelli F, Banci L, Svergun DI, Ciofi-Baffoni S.

J Mol Biol. 2023 May 19:168154

152

May 15, 2023

Structural basis for different membrane-binding properties of E. coli anaerobic and human mitochondrial β-oxidation trifunctional enzymes

doi: 10.1016/j.str.2023.04.011

Sah-Teli SK, Pinkas M, Hynönen MJ, Butcher SJ, Wierenga RK, Novacek J, Venkatesan R.

Structure. 2023 May 11:S0969-2126(23)00134-X

151

May 11, 2023

Blood pH Analysis in Combination with Molecular Medical Tools in Relation to COVID-19 Symptoms

doi: 10.3390/biomedicines11051421

Siebert H-C, Eckert T, Bhunia A, Klatte N, Mohri M, Siebert S, Kozarova A, Hudson JW, Zhang R, Zhang N, Li L, Gousias K, Kanakis D, Yan M, Jiménez-Barbero J, Kožár T, Nifantiev NE, Vollmer C, Brandenburger T, Kindgen-Milles D, Haak T, Petridis AK.

Biomedicines. 2023; 11(5):1421

150

May 08, 2023

Structural and functional features of a broad-spectrum prophage-encoded enzybiotic from Enterococcus faecium

doi: 10.1038/s41598-023-34309-2

Premetis GE, Stathi A, Papageorgiou AC, Labrou NE.

Sci Rep. 2023 May 8;13(1):7450

149

May 10, 2023

Shedding Light on Osteosarcoma Cell Differentiation: Impact on Biomineralization and Mitochondria Morphology

doi: 10.3390/ijms24108559

Rossi F, Picone G, Cappadone C, Sorrentino A, Columbaro M, Farruggia G, Catelli E, Sciutto G, Prati S, Oliete R, Pasini A, Pereiro E, Iotti S, Malucelli E.

International Journal of Molecular Sciences. 2023; 24(10):8559

148

Apr 01, 2023

ZART: A novel multiresolution reconstruction algorithm with motion-blur correction for single particle analysis

doi: 10.1016/j.jmb.2023.168088

Herreros D, Kiska J, Ramirez E, Filipovic J, Carazo JM, Sorzano COS.

J Mol Biol. 2023 Apr 6:168088

147

Apr 07, 2023

Introducing NMR strategies to define water molecules that drive metal binding in a transcriptional regulator

doi: 10.1016/j.jmro.2023.100114

Villarruel Dujovne M, Bringas M, Felli IC, Ravera E, Di Lella S, Capdevila DA.

Journal of Magnetic Resonance Open, 100114

 

146

Mar 22, 2023

Structural and Functional Characterization of the Newly Designed Antimicrobial Peptide Crabrolin21

doi: 10.3390/membranes13030365

Cantini F, Giannì P, Bobone S, Troiano C, van Ingen H, Massoud R, Perini N, Migliore L, Savarin P, Sanders C, Stella L, Sette M.

Membranes. 2023; 13(3):365

 

145

Jan 17, 2023

Solid-state NMR - a complementary technique for protein framework characterization

doi: 10.1039/d2cc05725e

Cerofolini L, Ramberg KO, Padilla LC, Antonik P, Ravera E, Luchinat C, Fragai M, Crowley PB.

Chem Commun (Camb). 2023 Jan 17;59(6):776-779

144

Nov 25, 2022

The Intriguing mitoNEET: Functional and Spectroscopic Properties of a Unique [2Fe-2S] Cluster Coordination Geometry

doi: 10.3390/molecules27238218

Camponeschi F, Piccioli M, Banci L.

Molecules. 2022 Nov 25;27(23):8218

143

May 4, 2022

In-cell NMR: Why and how?

doi: 10.1016/j.pnmrs.2022.04.002

Theillet FX, Luchinat E.

Prog Nucl Magn Reson Spectrosc. 2022 Oct-Dec;132-133:1-112

142

Jan 10, 2023

Engineered Nonviral Protein Cages Modified for MR Imaging

doi: 10.1021/acsabm.2c00892

Kaster MA, Levasseur MD, Edwardson TGW, Caldwell MA, Hofmann D, Licciardi G, Parigi G, Luchinat C, Hilvert D, Meade TJ.

ACS Appl Bio Mater. 2023 Feb 20;6(2):591-602

141

Feb 22, 2023

The complex structure of Fomes fomentarius represents an architectural design for high-performance ultralightweight materials

doi: 10.1126/sciadv.ade5417

Pylkkänen R, Werner D, Bishoyi A, Weil D, Scoppola E, Wagermaier W, Safeer A, Bahri S, Baldus M, Paananen A, Penttilä M, Szilvay GR, Mohammadi P.

Sci Adv. 2023 Feb 22;9(8):eade5417

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