iNEXT-Discovery: Scientific publications

All publications from iNEXT-Discovery acknowledge the project and appear as Open Access!

 

241-260  < >  201-220

 

       

240

Jan 07, 2025

Structural and bioinformatics analyses identify deoxydinucleotide-specific nucleases and their association with genomic islands in gram-positive bacteria

doi: 10.1093/nar/gkae1235

Mortensen S, Kuncová S, Lormand JD, Myers TM, Kim SK, Lee VT, Winkler WC, Sondermann H.

Nucleic Acids Res. 2025 Jan 7;53(1):gkae1235

239

Jan 07, 2025

Magnetotactic bacteria from diverse Pseudomonadota families biomineralize intracellular Ca-carbonate

doi: 10.1093/ismejo/wrae260

Mangin CC, Benzerara K, Bergot M, Menguy N, Alonso B, Fouteau S, Méheust R, Chevrier D, Godon C, Turrini E, Mehta N, Duverger A, Travert C, Busigny V, Duprat E, Bolzoni R, Cruaud C, Viollier E, Jézéquel D, Vallenet D, Lefèvre CT, Monteil CL.

ISME J. 2025 Jan 7:wrae260

238

Feb 06, 2025

Nucleocapsid assembly drives Ebola viral factory maturation and dispersion

doi: 10.1016/j.cell.2024.11.024

Vallbracht M, Bodmer BS, Fischer K, Makroczyova J, Winter SL, Wendt L, Wachsmuth-Melm M, Hoenen T, Chlanda P.

Cell. 2024 Dec 14:S0092-8674(24)01340-0

237

Dec 24, 2024

NMR Studies on the Structure of Yeast Sis1 and the Dynamics of
Its Interaction with Ssa1-EEVD

doi: 10.3390/molecules30010011

Matos CO, Pinheir GMS, Caruso IP, Amorim GC, Almeida FCL, Ramos CHI.

Molecules 2025, 30, 11

236

Nov 07, 2024

Cryo-EM structure of a lysozyme-derived amyloid fibril from hereditary amyloidosis

doi: 10.1038/s41467-024-54091-7

Karimi-Farsijani S, Sharma K, Ugrina M, Kuhn L, Pfeiffer PB, Haupt C, Wiese S, Hegenbart U, Schönland SO, Schwierz N, Schmidt M,  Fändrich M.

Nat Commun 15, 9648 (2024)

235

Oct 18, 2024

Structural insights into the mechanism of DNA branch migration during homologous recombination in bacteria

doi: 10.1038/s44318-024-00264-5

Rosa LT, Vernhes É, Soulet AL, Polard P, Fronzes R.

EMBO J. 2024 Oct 18. Epub ahead of print.

234

Oct 09, 2024

Annulate Lamellae biogenesis is essential for nuclear pore function

doi: 10.21203/rs.3.rs-5104543

Lin J, Agote-Arán A, Lia Y, Schoch R, Ronchi P, Cochard V, Zhu R, Kleiss C, Ruff M, Chevreux G, Schwab Y, Klaholz BP, Sumara I.

Preprint (Version 1); Research Square

233

Oct 01, 2024

Structural studies of β-glucosidase from the thermophilic bacterium Caldicellulosiruptor saccharolyticus

doi: 10.1107/S2059798324009252

Sotiropoulou AI, Hatzinikolaou DG, Chrysina ED.

Acta Crystallogr D Struct Biol. 2024 Oct 1;80(Pt 10):733-743

232

Oct 20, 2022

A round-robin approach provides a detailed assessment of biomolecular small-angle scattering data reproducibility and yields consensus curves for benchmarking

doi: 10.1107/S2059798322009184

Trewhella J, Vachette P, Bierma J, Blanchet C, Brookes E, Chakravarthy S, Chatzimagas L, Cleveland TE 4th, Cowieson N, Crossett B, Duff AP, Franke D, Gabel F, Gillilan RE, Graewert M, Grishaev A, Guss JM, Hammel M, Hopkins J, Huang Q, Hub JS, Hura GL, Irving TC, Jeffries CM, Jeong C, Kirby N, Krueger S, Martel A, Matsui T, Li N, Pérez J, Porcar L, Prangé T, Rajkovic I, Rocco M, Rosenberg DJ, Ryan TM, Seifert S, Sekiguchi H, Svergun D, Teixeira S, Thureau A, Weiss TM, Whitten AE, Wood K, Zuo X.

Acta Crystallogr D Struct Biol. 2022 Nov 1;78(Pt 11):1315-1336

231

Sep 19, 2024

Kinetic and Structural Studies of the Plastidial Solanum tuberosum
Phosphorylase

doi: 10.1021/acsomega.4c06313

Koulas SM, Kyriakis E, Tsagkarakou AS, Leonidas DD.

ACS Omega 2024

230

Jan 11, 2023

Estimating conformational landscapes from Cryo-EM particles by 3D Zernike polynomials

doi: 10.1038/s41467-023-35791-y

Herreros D, Lederman RR, Krieger JM, Jiménez-Moreno A, Martínez M, Myška D, Strelak D, Filipovic J, Sorzano COS, Carazo JM.

Nat Commun. 2023 Jan 11;14(1):154

229

Aug 01, 2023

Combining Solid-State NMR with Structural and Biophysical Techniques to Design Challenging Protein-Drug Conjugates

doi: 10.1002/anie.202303202

Cerofolini L, Vasa K, Bianconi E, Salobehaj M, Cappelli G, Bonciani A, Licciardi G, Pérez-Ràfols A, Padilla-Cortés L, Antonacci S, Rizzo D, Ravera E, Viglianisi C, Calderone V, Parigi G, Luchinat C, Macchiarulo A, Menichetti S, Fragai M.

Angew Chem Int Ed Engl. 2023 Aug 1;62(31):e202303202

228

Sep 18, 2023

Effects of boron supplementation on dairy calves' health: a metabolomics study

doi: 10.21608/avmj.2023.218730.1157

Adam A, Baspinar N, Vignoli A, Meoni G, Tenori L, Basoglu A, Gulersoy E, Bicici R.

Assiut Vet. Med. J. Vol. 70 No. 180 January 2024, 10-25

227

Apr 03, 2023

Modulation of Aβ42 Aggregation Kinetics and Pathway by Low-Molecular-Weight Inhibitors

doi: 10.1002/cbic.202200760

Hutchison MT, Bellomo G, Cherepanov A, Stirnal E, Fürtig B, Richter C, Linhard V, Gurewitsch E, Lelli M, Morgner N, Schrader T, Schwalbe H.

Chembiochem. 2023 Apr 3;24(7):e202200760

226

Apr 25, 2023

A Fijivirus Major Viroplasm Protein Shows RNA-Stimulated ATPase Activity by Adopting Pentameric and Hexameric Assemblies of Dimers

doi: 10.1128/mbio.00023-23

Llauger G, Melero R, Monti D, Sycz G, Huck-Iriart C, Cerutti ML, Klinke S, Mikkelsen E, Tijman A, Arranz R, Alfonso V, Arellano SM, Goldbaum FA, Sterckx YGJ, Carazo JM, Kaufman SB, Dans PD, Del Vas M, Otero LH.

mBio. 2023 Apr 25;14(2):e0002323

225

Mar 10, 2023

Unraveling the mechanism of [4Fe-4S] cluster assembly on the N-terminal cluster binding site of NUBP1

doi: 10.1002/pro.4625

Bargagna B, Matteucci S, Ciofi-Baffoni S, Camponeschi F, Banci L.

Protein Sci. 2023 May;32(5):e4625

224

Apr 19, 2024

Structural and molecular insights into a bifunctional glycoside hydrolase 30 xylanase specific to glucuronoxylan

doi: 10.1002/bit.28731

Pentari C, Kosinas C, Nikolaivits E, Dimarogona M, Topakas E.

Biotechnol Bioeng. 2024 Jul;121(7):2067-2078

223

Jan 09, 2024

Controlling the incorporation of fluorinated amino acids in human cells and its structural impact

doi: 10.1002/pro.4910

Costantino A, Pham LBT, Barbieri L, Calderone V, Ben-Nissan G, Sharon M, Banci L, Luchinat E.

Protein Sci. 2024 Mar;33(3):e4910

222

Apr 19, 2024

X-ray structure and enzymatic study of a bacterial NADPH oxidase highlight the activation mechanism of eukaryotic NOX

doi: 10.7554/eLife.93759

Petit-Hartlein I, Vermot A, Thepaut M, Humm AS, Dupeux F, Dupuy J, Chaptal V, Marquez JA, Smith SME, Fieschi F.

Elife. 2024 Apr 19;13:RP93759

221

Jul 23, 2024

Controlled pH alteration enables guanine accumulation and drives crystallization within iridosomes

doi: 10.1101/2024.07.20.604036

Eyal Z, Gorelick-Ashkenazi A, Deis R, Barzilay Y, Yonatan Broder Y, Perry Kellum A, Varsano N, Hartstein M, Sorrentino A, Kaplan-Ashiri I, Rechav K, Metzler R, Houben L, Kronik L, Rez P, Gur D.

BioRxiv

241-260  < >  201-220